Detailed information of SNP:
|
SNP ID:
sf0620148439(Gbrowse)
Chromosome: chr06 Position: 20148439 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.38% | 13.62% |
| All Indica | 798 | 87.09% | 12.91% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620148439 | G->A | LOC_Os06g34670(LOC_Os06g34670.1) | Non-Synonymous SNP |