Detailed information of SNP:
|
SNP ID:
sf0620148551(Gbrowse)
Chromosome: chr06 Position: 20148551 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 94.61% | 5.39% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 471 | 85.14% | 14.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 86.89% | 13.11% |
| Tropical Japonica | 83 | 89.16% | 10.84% |
| Japonica Intermediate | 60 | 70.00% | 30.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620148551 | T->A | LOC_Os06g34670(LOC_Os06g34670.1) | Non-Synonymous SNP |