Detailed information of SNP:
|
SNP ID:
sf0620150425(Gbrowse)
Chromosome: chr06 Position: 20150425 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 94.70% | 5.30% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 476 | 85.50% | 14.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 86.75% | 13.25% |
| Tropical Japonica | 81 | 91.36% | 8.64% |
| Japonica Intermediate | 63 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620150425 | C->T | LOC_Os06g34680(LOC_Os06g34680.1) | Non-Synonymous SNP |