Detailed information of SNP:
|
SNP ID:
sf0620152789(Gbrowse)
Chromosome: chr06 Position: 20152789 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.17% | 38.83% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620152789 | T->C | INTERGENIC | None |