Detailed information of SNP:
|
SNP ID:
sf0620178420(Gbrowse)
Chromosome: chr06 Position: 20178420 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 76.43% | 23.57% |
| All Indica | 797 | 86.83% | 13.17% |
| All Japonica | 497 | 72.84% | 27.16% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620178420 | A->G | INTERGENIC | None |