Detailed information of SNP:
|
SNP ID:
sf0620183705(Gbrowse)
Chromosome: chr06 Position: 20183705 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 53.61% | 46.39% |
| All Indica | 798 | 80.70% | 19.30% |
| All Japonica | 492 | 3.05% | 96.95% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 77.27% | 22.73% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 331 | 1.21% | 98.79% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620183705 | T->C | INTERGENIC | None |