Detailed information of SNP:
|
SNP ID:
sf0620201118(Gbrowse)
Chromosome: chr06 Position: 20201118 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 53.77% | 46.23% |
| All Indica | 798 | 88.35% | 11.65% |
| All Japonica | 484 | 6.40% | 93.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 329 | 6.99% | 93.01% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 61 | 3.28% | 96.72% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620201118 | A->G | INTERGENIC | None |