Detailed information of SNP:
|
SNP ID:
sf0620202387(Gbrowse)
Chromosome: chr06 Position: 20202387 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.20% | 37.80% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 496 | 8.47% | 91.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 8.68% | 91.32% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620202387 | G->C | LOC_Os06g34760(LOC_Os06g34760.1) | Non-Synonymous SNP |