Detailed information of SNP:
|
SNP ID:
sf0620203838(Gbrowse)
Chromosome: chr06 Position: 20203838 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.02% | 37.98% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 11.47% | 88.53% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620203838 | T->G | LOC_Os06g34760(LOC_Os06g34760.1) | Non-Synonymous SNP |