Detailed information of SNP:
|
SNP ID:
sf0620210426(Gbrowse)
Chromosome: chr06 Position: 20210426 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 97.27% | 2.73% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 47 | 61.70% | 38.30% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620210426 | C->T | INTERGENIC | None |