Detailed information of SNP:
|
SNP ID:
sf0620213080(Gbrowse)
Chromosome: chr06 Position: 20213080 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1237 | 96.60% | 3.40% |
| All Indica | 622 | 93.41% | 6.59% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 271 | 95.20% | 4.80% |
| Indica II | 162 | 90.12% | 9.88% |
| Indica Intermediate | 189 | 93.65% | 6.35% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620213080 | T->C | LOC_Os06g34780(LOC_Os06g34780.1) | INTRON |