Detailed information of SNP:
|
SNP ID:
sf0620277961(Gbrowse)
Chromosome: chr06 Position: 20277961 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 64.05% | 35.95% |
| All Indica | 784 | 42.09% | 57.91% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 370 | 33.78% | 66.22% |
| Indica II | 209 | 45.45% | 54.55% |
| Indica Intermediate | 205 | 53.66% | 46.34% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620277961 | T->A | LOC_Os06g34870(LOC_Os06g34870.1) | INTRON |