Detailed information of SNP:
|
SNP ID:
sf0620278442(Gbrowse)
Chromosome: chr06 Position: 20278442 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 52.95% | 47.05% |
| All Indica | 780 | 76.41% | 23.59% |
| All Japonica | 493 | 12.58% | 87.42% |
| Aus | 60 | 73.33% | 26.67% |
| Indica I | 370 | 81.08% | 18.92% |
| Indica II | 209 | 72.73% | 27.27% |
| Indica Intermediate | 201 | 71.64% | 28.36% |
| Temperate Japonica | 332 | 9.64% | 90.36% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620278442 | C->T | LOC_Os06g34870(LOC_Os06g34870.1) | INTRON |