Detailed information of SNP:
|
SNP ID:
sf0620295859(Gbrowse)
Chromosome: chr06 Position: 20295859 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 57.02% | 42.98% |
| All Indica | 775 | 30.19% | 69.81% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 46.88% | 53.12% |
| Indica I | 366 | 29.51% | 70.49% |
| Indica II | 206 | 28.16% | 71.84% |
| Indica Intermediate | 203 | 33.50% | 66.50% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620295859 | A->G | INTERGENIC | None |