Detailed information of SNP:
|
SNP ID:
sf0620321308(Gbrowse)
Chromosome: chr06 Position: 20321308 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 63.27% | 36.73% |
| All Indica | 790 | 97.59% | 2.41% |
| All Japonica | 495 | 3.23% | 96.77% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620321308 | A->G | INTERGENIC | None |