Detailed information of SNP:
|
SNP ID:
sf0620322445(Gbrowse)
Chromosome: chr06 Position: 20322445 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 74.87% | 25.13% |
| All Indica | 695 | 53.67% | 46.33% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 332 | 37.65% | 62.35% |
| Indica II | 186 | 72.58% | 27.42% |
| Indica Intermediate | 177 | 63.84% | 36.16% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620322445 | G->A | INTERGENIC | None |