Detailed information of SNP:
|
SNP ID:
sf0620347479(Gbrowse)
Chromosome: chr06 Position: 20347479 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 97.22% | 2.78% |
| All Indica | 756 | 96.03% | 3.97% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 89.66% | 10.34% |
| Indica I | 361 | 95.29% | 4.71% |
| Indica II | 203 | 98.03% | 1.97% |
| Indica Intermediate | 192 | 95.31% | 4.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620347479 | A->G | LOC_Os06g34980(LOC_Os06g34980.1) | Synonymous |