Detailed information of SNP:
|
SNP ID:
sf0620349633(Gbrowse)
Chromosome: chr06 Position: 20349633 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 55.28% | 44.72% |
| All Indica | 770 | 87.79% | 12.21% |
| All Japonica | 488 | 2.87% | 97.13% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 364 | 87.09% | 12.91% |
| Indica II | 200 | 85.00% | 15.00% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 330 | 1.82% | 98.18% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 64 | 3.12% | 96.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 36.84% | 63.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620349633 | A->G | LOC_Os06g35000(LOC_Os06g35000.1) | Non-Synonymous SNP |