Detailed information of SNP:
|
SNP ID:
sf0620350587(Gbrowse)
Chromosome: chr06 Position: 20350587 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 52.75% | 47.25% |
| All Indica | 771 | 85.34% | 14.66% |
| All Japonica | 495 | 2.42% | 97.58% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 359 | 85.52% | 14.48% |
| Indica II | 205 | 81.46% | 18.54% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620350587 | G->A | LOC_Os06g35000(LOC_Os06g35000.1) | Synonymous |