Detailed information of SNP:
|
SNP ID:
sf0620353396(Gbrowse)
Chromosome: chr06 Position: 20353396 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 55.07% | 44.93% |
| All Indica | 768 | 25.78% | 74.22% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 62 | 43.55% | 56.45% |
| Indica I | 365 | 25.75% | 74.25% |
| Indica II | 204 | 30.88% | 69.12% |
| Indica Intermediate | 199 | 20.60% | 79.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620353396 | A->G | INTERGENIC | None |