Detailed information of SNP:
|
SNP ID:
sf0620355293(Gbrowse)
Chromosome: chr06 Position: 20355293 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 57.22% | 42.78% |
| All Indica | 789 | 90.75% | 9.25% |
| All Japonica | 495 | 1.82% | 98.18% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 210 | 84.29% | 15.71% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620355293 | T->C | INTERGENIC | None |