Detailed information of SNP:
|
SNP ID:
sf0620396750(Gbrowse)
Chromosome: chr06 Position: 20396750 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 97.83% | 2.17% |
| All Indica | 770 | 96.62% | 3.38% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 357 | 98.60% | 1.40% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620396750 | T->C | INTERGENIC | None |