Detailed information of SNP:
|
SNP ID:
sf0620397183(Gbrowse)
Chromosome: chr06 Position: 20397183 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1300 | 98.08% | 1.92% |
| All Indica | 785 | 97.32% | 2.68% |
| All Japonica | 468 | 99.57% | 0.43% |
| Aus | 1 | 100.00% | 0.00% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 207 | 96.14% | 3.86% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 46 | 97.83% | 2.17% |
| Group VI/Aromatic | 8 | 75.00% | 25.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620397183 | A->G | INTERGENIC | None |