Detailed information of SNP:
|
SNP ID:
sf0620411831(Gbrowse)
Chromosome: chr06 Position: 20411831 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 61.01% | 38.99% |
| All Indica | 784 | 32.65% | 67.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 21.41% | 78.59% |
| Indica II | 211 | 36.97% | 63.03% |
| Indica Intermediate | 204 | 48.53% | 51.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620411831 | G->A | INTERGENIC | None |