Detailed information of SNP:
|
SNP ID:
sf0620420682(Gbrowse)
Chromosome: chr06 Position: 20420682 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 91.91% | 8.09% |
| All Indica | 792 | 88.13% | 11.87% |
| All Japonica | 495 | 96.36% | 3.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 206 | 87.86% | 12.14% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620420682 | G->A | INTERGENIC | None |