Detailed information of SNP:
|
SNP ID:
sf0620423957(Gbrowse)
Chromosome: chr06 Position: 20423957 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 64.00% | 36.00% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 494 | 6.48% | 93.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620423957 | G->A | INTERGENIC | None |