Detailed information of SNP:
|
SNP ID:
sf0620433728(Gbrowse)
Chromosome: chr06 Position: 20433728 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1205 | 83.07% | 16.93% |
| All Indica | 589 | 66.04% | 33.96% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 258 | 64.34% | 35.66% |
| Indica II | 158 | 54.43% | 45.57% |
| Indica Intermediate | 173 | 79.19% | 20.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620433728 | C->T | LOC_Os06g35120(LOC_Os06g35120.1) | INTRON |