Detailed information of SNP:
|
SNP ID:
sf0620434114(Gbrowse)
Chromosome: chr06 Position: 20434114 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 65.25% | 34.75% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 487 | 3.08% | 96.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 0.92% | 99.08% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620434114 | A->G | LOC_Os06g35120(LOC_Os06g35120.1) | Non-Synonymous SNP |