Detailed information of SNP:
|
SNP ID:
sf0620492417(Gbrowse)
Chromosome: chr06 Position: 20492417 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.41% | 37.59% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620492417 | T->C | INTERGENIC | None |