Detailed information of SNP:
|
SNP ID:
sf0620512080(Gbrowse)
Chromosome: chr06 Position: 20512080 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 94.97% | 5.03% |
| All Indica | 792 | 95.96% | 4.04% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620512080 | A->G | LOC_Os06g35180(LOC_Os06g35180.1) | INTRON |