Detailed information of SNP:



SNP ID: sf0620512241(Gbrowse)

Chromosome: chr06

Position: 20512241
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1419 97.82% 2.18%
All Indica799 99.62% 0.38%
All Japonica497 95.77% 4.23%
Aus67 97.01% 2.99%
Indica I375 99.73% 0.27%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 97.01% 2.99%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0620512241 T->G LOC_Os06g35180(LOC_Os06g35180.1) INTRON