Detailed information of SNP:
SNP ID:
sf0620512241(Gbrowse)
Chromosome: chr06 Position: 20512241 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 97.82% | 2.18% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 95.77% | 4.23% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 97.01% | 2.99% |
Tropical Japonica | 94 | 96.81% | 3.19% |
Japonica Intermediate | 68 | 88.24% | 11.76% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0620512241 | T->G | LOC_Os06g35180(LOC_Os06g35180.1) | INTRON |