Detailed information of SNP:
|
SNP ID:
sf0620512425(Gbrowse)
Chromosome: chr06 Position: 20512425 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 82.59% | 17.41% |
| All Indica | 795 | 93.84% | 6.16% |
| All Japonica | 497 | 63.38% | 36.62% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620512425 | G->A | LOC_Os06g35180(LOC_Os06g35180.1) | Non-Synonymous SNP |