Detailed information of SNP:
|
SNP ID:
sf0620512550(Gbrowse)
Chromosome: chr06 Position: 20512550 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 97.24% | 2.76% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 60.32% | 39.68% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620512550 | C->T | LOC_Os06g35180(LOC_Os06g35180.1) | Synonymous |