Detailed information of SNP:
|
SNP ID:
sf0620513415(Gbrowse)
Chromosome: chr06 Position: 20513415 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 96.97% | 3.03% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620513415 | A->G | LOC_Os06g35180(LOC_Os06g35180.1) | Non-Synonymous SNP |