Detailed information of SNP:
|
SNP ID:
sf0620513660(Gbrowse)
Chromosome: chr06 Position: 20513660 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 95.41% | 4.59% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620513660 | T->C | LOC_Os06g35180(LOC_Os06g35180.1) | INTRON |