Detailed information of SNP:
|
SNP ID:
sf0620523614(Gbrowse)
Chromosome: chr06 Position: 20523614 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 98.36% | 1.64% |
| All Indica | 781 | 97.18% | 2.82% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 204 | 96.08% | 3.92% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620523614 | C->T | LOC_Os06g35200(LOC_Os06g35200.1) | Non-Synonymous SNP |