Detailed information of SNP:
|
SNP ID:
sf0620534798(Gbrowse)
Chromosome: chr06 Position: 20534798 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 50.22% | 49.78% |
| All Indica | 755 | 78.41% | 21.59% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 353 | 71.95% | 28.05% |
| Indica II | 207 | 86.96% | 13.04% |
| Indica Intermediate | 195 | 81.03% | 18.97% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620534798 | T->C | LOC_Os06g35210(LOC_Os06g35210.1) | INTRON |