Detailed information of SNP:
|
SNP ID:
sf0620535364(Gbrowse)
Chromosome: chr06 Position: 20535364 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1348 | 53.19% | 46.81% |
| All Indica | 733 | 84.45% | 15.55% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 336 | 82.44% | 17.56% |
| Indica II | 200 | 87.00% | 13.00% |
| Indica Intermediate | 197 | 85.28% | 14.72% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620535364 | C->A | LOC_Os06g35210(LOC_Os06g35210.1) | INTRON |