Detailed information of SNP:
|
SNP ID:
sf0620535800(Gbrowse)
Chromosome: chr06 Position: 20535800 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 96.95% | 3.05% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 426 | 91.55% | 8.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 98.66% | 1.34% |
| Tropical Japonica | 72 | 59.72% | 40.28% |
| Japonica Intermediate | 55 | 94.55% | 5.45% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620535800 | G->T | LOC_Os06g35210(LOC_Os06g35210.1) | Non-Synonymous SNP |