Detailed information of SNP:



SNP ID: sf0620541204(Gbrowse)

Chromosome: chr06

Position: 20541204
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 84.21% 15.79%
All Indica799 99.12% 0.88%
All Japonica497 58.35% 41.65%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 96.71% 3.29%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 74.33% 25.67%
Tropical Japonica94 10.64% 89.36%
Japonica Intermediate68 45.59% 54.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0620541204 G->A INTERGENIC None