Detailed information of SNP:
|
SNP ID:
sf0620557746(Gbrowse)
Chromosome: chr06 Position: 20557746 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 91.65% | 8.35% |
| All Indica | 793 | 89.03% | 10.97% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 86.22% | 13.78% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620557746 | G->A | INTERGENIC | None |