Detailed information of SNP:
|
SNP ID:
sf0620559060(Gbrowse)
Chromosome: chr06 Position: 20559060 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 57.23% | 42.77% |
| All Indica | 774 | 92.38% | 7.62% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 59 | 71.19% | 28.81% |
| Indica I | 362 | 91.71% | 8.29% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620559060 | G->A | LOC_Os06g35260(LOC_Os06g35260.1) | SNPs that introduce stop codons |