Detailed information of SNP:
|
SNP ID:
sf0620583091(Gbrowse)
Chromosome: chr06 Position: 20583091 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 58.33% | 41.67% |
| All Indica | 795 | 90.19% | 9.81% |
| All Japonica | 494 | 2.23% | 97.77% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 86.86% | 13.14% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620583091 | C->T | INTERGENIC | None |