Detailed information of SNP:
|
SNP ID:
sf0620605048(Gbrowse)
Chromosome: chr06 Position: 20605048 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 62.63% | 37.37% |
| All Indica | 793 | 96.72% | 3.28% |
| All Japonica | 481 | 1.66% | 98.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 325 | 1.54% | 98.46% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 62 | 1.61% | 98.39% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620605048 | T->C | INTERGENIC | None |