Detailed information of SNP:
|
SNP ID:
sf0620612405(Gbrowse)
Chromosome: chr06 Position: 20612405 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 89.88% | 10.12% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 444 | 72.07% | 27.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 305 | 85.57% | 14.43% |
| Tropical Japonica | 80 | 30.00% | 70.00% |
| Japonica Intermediate | 59 | 59.32% | 40.68% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620612405 | G->A | LOC_Os06g35350(LOC_Os06g35350.1) | Non-Synonymous SNP |