Detailed information of SNP:
|
SNP ID:
sf0620613938(Gbrowse)
Chromosome: chr06 Position: 20613938 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1240 | 71.85% | 28.15% |
| All Indica | 637 | 52.90% | 47.10% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 60 | 46.67% | 53.33% |
| Indica I | 302 | 49.01% | 50.99% |
| Indica II | 170 | 60.00% | 40.00% |
| Indica Intermediate | 165 | 52.73% | 47.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 33 | 84.85% | 15.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620613938 | C->T | LOC_Os06g35350(LOC_Os06g35350.1) | Non-Synonymous SNP |