Detailed information of SNP:
|
SNP ID:
sf0620616225(Gbrowse)
Chromosome: chr06 Position: 20616225 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 85.48% | 14.52% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 491 | 63.75% | 36.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 76.95% | 23.05% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 65 | 53.85% | 46.15% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620616225 | C->T | LOC_Os06g35360(LOC_Os06g35360.1) | Non-Synonymous SNP |