Detailed information of SNP:
|
SNP ID:
sf0620618370(Gbrowse)
Chromosome: chr06 Position: 20618370 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 76.88% | 23.12% |
| All Indica | 791 | 92.04% | 7.96% |
| All Japonica | 496 | 49.80% | 50.20% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 30.15% | 69.85% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620618370 | A->G | LOC_Os06g35360(LOC_Os06g35360.1) | INTRON |