Detailed information of SNP:
|
SNP ID:
sf0620618375(Gbrowse)
Chromosome: chr06 Position: 20618375 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 97.59% | 2.41% |
| All Indica | 793 | 96.09% | 3.91% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620618375 | C->T | LOC_Os06g35360(LOC_Os06g35360.1) | INTRON |
| sf0620618375 | C->T | LOC_Os06g35360(LOC_Os06g35360.1) | SNPs that disrupt splice sites |