Detailed information of SNP:
|
SNP ID:
sf0620622484(Gbrowse)
Chromosome: chr06 Position: 20622484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 85.58% | 14.42% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 494 | 60.93% | 39.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 92 | 16.30% | 83.70% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620622484 | C->T | INTERGENIC | None |